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Batch running jupyter notebooks

Based on papermill, we can batch run multiple pharaglow experiments:

We will have a batch run script (could be a notebook or a python script) and a templateNotebook. One can then run a whole folder of data using the batch run script with the same set of parameters.

Todo: - optimize parameter readings - automate lawn file reading - make robust by skipping over folders that have issues - report back what is one (summary for eachs subfolder.)

wiki/documentation/monika/batch_running_jupyter_notebooks.txt · Last modified: 2020/05/04 04:56 by mscholz