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wiki:documentation:monika:batch_running_jupyter_notebooks [2020/05/04 04:56] (current)
mscholz created
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 +====== Batch running jupyter notebooks ======
 +
 +Based on papermill, we can batch run multiple pharaglow experiments:
 +
 +https://papermill.readthedocs.io/en/latest/installation.html
 +
 +We will have a batch run script (could be a notebook or a python script) and a templateNotebook.
 +One can then run a whole folder of data using the batch run script with the same set of parameters.
 +
 +Todo:
 +- optimize parameter readings
 +- automate lawn file reading
 +- make robust by skipping over folders that have issues
 +- report back what is one (summary for eachs subfolder.)
 +
 +
 +
 +
  
wiki/documentation/monika/batch_running_jupyter_notebooks.txt ยท Last modified: 2020/05/04 04:56 by mscholz

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