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wiki:documentation:monika:distutils_notes

dcomputer notes

To add conda to a nif3011 account do this: add conda to the PATH variable in the file '~/.profile'.

# add anaconda path
PATH="/opt/anaconda/bin:$PATH"

distutils notes

when installing the pypeline package, we need to use the –force option to overwrite old code. python setup.py install –force

testing the drawing capabilities

wiki:documentation:monika:diagramoutlier.png

Tracking neurons with trackpy

Using trackpy's ability to track particles, we can easily connect the neurons in Inka's immobilized worms. Using nearest-neighbour velocity or overall drift prediction doesn't seem to matter much. By interolating over 'dim' neurons and extending trajectories (backfill/front-fill), we seem to get very nice data!

wiki/documentation/monika/distutils_notes.txt · Last modified: 2020/08/25 06:19 by mscholz

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