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wiki:documentation:wiki:documentation:nicolina:26.11.19 [2019/11/26 16:13] (current)
nzjacic created
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 +====== 26.11.19 ======
 +
 +===== Objectives =====
 +
 +  * Set up another sync
 +  * Check on sync plates from yesterday
 +  * Z-project images
 +  * Play around with ImageJ tools introduced by Monika today
 +
 +===== Observations =====
 +
 +  * Synced plates from yesterday seem to have worked well - no mixed stages and many of the eggs hatched
 +  * Plates from today synced at 14:30
 +  * ImageJ
 +    * Cropped image --> image --> duplicate
 +    * Image --> adjust --> threshold - get a good outline of only the worm
 +    * Analyze --> analyze particles --> set size e.g. 100-infinity (can filter which worm to track using size rather than physically having to crop them out)
 +    * Analyze --> set measurements --> check al boxes for now
 +    * See whether any of the parameters best describe pumping action
 +      * XM?
 +      * YM?
 +      * Perim.?
 +  * Z-project settings: 1800, 500, 200
  
wiki/documentation/wiki/documentation/nicolina/26.11.19.txt ยท Last modified: 2019/11/26 16:13 by nzjacic

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